PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676710830
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family LBD
Protein Properties Length: 192aa    MW: 21649.3 Da    PI: 4.3341
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676710830genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26085.57.5e-2751061100
     DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkal..peeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 
                +C++Ck+ +++C+++C++   fp+++p+kf  v ++FG +nv k++++   +  er  +++sl+yeAear++dP++G vg+++  +  l++lk+++++ k
  676710830   5 PCSVCKFFNNDCSDECIFKASFPSTEPEKFDRVDRVFGGENVFKFMTNPnlNSWERGLVATSLCYEAEARIQDPISGYVGIFSVFKDMLNNLKEKINSEK 104
                7*********************************************9862266679***************************************99887 PP

     DUF260  99 ee 100
                +e
  676710830 105 DE 106
                76 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089119.5424107IPR004883Lateral organ boundaries, LOB
PfamPF031956.3E-255102IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 192 aa     Download sequence    Send to blast
MALVPCSVCK FFNNDCSDEC IFKASFPSTE PEKFDRVDRV FGGENVFKFM TNPNLNSWER  60
GLVATSLCYE AEARIQDPIS GYVGIFSVFK DMLNNLKEKI NSEKDELAAI VGPERVPQFS  120
NIPVCDHFLG TRASLNEFID NMEELNDAER NQLKRLPVDQ AHMIVEEIVY RRENQEIGDD  180
HGNAATSGES VA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLV4LS511e-43V4LS51_EUTSA; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM45251455
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G35900.12e-52LOB domain-containing protein 35